PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm.model.AsparagusV1_08.3045
Organism
Asparagus officinalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Asparagaceae; Asparagoideae; Asparagus
Family bHLH
Protein Properties Length: 178aa    MW: 20193.2 Da    PI: 8.5164
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm.model.AsparagusV1_08.3045genomePhytozomeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH42.51.2e-13551354
                                   HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                            HLH  3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54
                                   ++h e+E+rRR+ri+s +++Lr++l  +     +K +Ka+ L kAv+++++L
  evm.model.AsparagusV1_08.3045  5 KNHREAEKRRRERIKSHLDRLRTILACD-----PKTDKASLLAKAVDHVRDL 51
                                   78************************98.....7****************98 PP
Sequence ? help Back to Top
Protein Sequence    Length: 178 aa     Download sequence    
MLASKNHREA EKRRRERIKS HLDRLRTILA CDPKTDKASL LAKAVDHVRD LRQRTAEISD  60
TRLFPSETDE IIVLPGTDGR VPVFEASVCC DDRIDLLPEI IETLRSLRMR TLRAEIATLG  120
GRVRNVMVLA REKEEEEEES GDVGLLKEAL VALVNRSRSP DRSKRRRVMD PTEVAMV*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1164168KRRRV
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G41130.11e-41bHLH family protein