PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm.model.AsparagusV1_08.3277
Organism
Asparagus officinalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Asparagaceae; Asparagoideae; Asparagus
Family MYB
Protein Properties Length: 262aa    MW: 30571.7 Da    PI: 9.2655
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm.model.AsparagusV1_08.3277genomePhytozomeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding56.65.9e-183077148
                                   TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
                Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                                   +g+WT+eEd +lv +++++G+g+W+t++ + g+ R+ k+c++rw +yl
  evm.model.AsparagusV1_08.3277 30 KGPWTPEEDIILVSYIQEHGPGNWRTVPTKTGLMRCNKSCRLRWTNYL 77
                                   79********************************************97 PP
2Myb_DNA-binding46.67.8e-1583128148
                                    TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
                Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                                    rg++T+ E+  ++++ ++lG++ W++Ia++++  Rt++++k++w+++l
  evm.model.AsparagusV1_08.3277  83 RGNFTPHEEGMIIHLQALLGNR-WAAIASYLP-QRTDNDIKNYWNTHL 128
                                    89********************.*********.************996 PP
Sequence ? help Back to Top
Protein Sequence    Length: 262 aa     Download sequence    
MKHQEYQRKK KAKKKKMGRS PCCEKIGMKK GPWTPEEDII LVSYIQEHGP GNWRTVPTKT  60
GLMRCNKSCR LRWTNYLRPG IKRGNFTPHE EGMIIHLQAL LGNRWAAIAS YLPQRTDNDI  120
KNYWNTHLKK KLKKYETEIY RDHTTEPGIP ETTNMQSTLS RFTHNSSVYA SSTENISRLL  180
EKWTKTTTVK KEYQQQKQQS LVFDNSVNNC NNKEELESLL SFEAKQRSED HQEPMSLLEE  240
WLLDESTEQV EGLMEISDGV F*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1714QRKKKAKK
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G08810.11e-91MYB family protein