PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

evm.model.AsparagusV1_08.3395

Organism

Asparagus officinalis

Taxonomic ID

4686

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Asparagaceae; Asparagoideae; Asparagus

Family

LBD

Protein Properties

Length: 158aa MW: 17658.1 Da PI: 5.1983

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
evm.model.AsparagusV1_08.3395	genome	Phytozome	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	142.5	1.3e-44	6	105	1	100
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvi 80 +Ca+Ck+lrr+CakdC++ap fp+++p+kfa+vhk+FGasnv+k+l+++p ++r+da+sslvyeA+ar+rdPvyG+vg i evm.model.AsparagusV1_08.3395 6 PCASCKLLRRRCAKDCIFAPFFPSDDPQKFAIVHKVFGASNVSKMLQEVPFHQRSDAVSSLVYEANARMRDPVYGCVGAI 85 7***************************************************************************** PP DUF260 81 lklqqqleqlkaelallkee 100 + lq+q++ql+ +la +++e evm.model.AsparagusV1_08.3395 86 TFLQNQVSQLQMQLAIAQAE 105 *************99987 PP

Sequence ? help Back to Top
Protein Sequence Length: 158 aa Download sequence
MGGNSPCASC KLLRRRCAKD CIFAPFFPSD DPQKFAIVHK VFGASNVSKM LQEVPFHQRS 60 DAVSSLVYEA NARMRDPVYG CVGAITFLQN QVSQLQMQLA IAQAEILCIQ MQQDQHTAND 120 PDQLGFEEEE EKCFLLHDNG FSVAQVQETL KRESLWT*

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G30130.1	6e-72	LBD family protein