PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm.model.AsparagusV1_08.79
Organism
Asparagus officinalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Asparagaceae; Asparagoideae; Asparagus
Family Trihelix
Protein Properties Length: 220aa    MW: 26511.7 Da    PI: 8.0632
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm.model.AsparagusV1_08.79genomePhytozomeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix43.86.9e-141453886
                     trihelix 38 mrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86
                                 mrerg++rsp+qCk+kw+nl +ryk  ++ + +    + ++cp+fd+l+
  evm.model.AsparagusV1_08.79  1 MRERGYRRSPEQCKCKWKNLVNRYKGKETADPD----TGRQCPFFDELH 45
                                 89***********************99999887....4678******98 PP
Sequence ? help Back to Top
Protein Sequence    Length: 220 aa     Download sequence    
MRERGYRRSP EQCKCKWKNL VNRYKGKETA DPDTGRQCPF FDELHAVFTE RARNMQRLLE  60
MESGGASQSK KKLKRLAGDR SSEELLSDDE DDDDEESDVE RPTKGKKKKT EKVAHQQKAT  120
EKSRTGNNSN IHEVLQEFFQ QQQRMELQWQ EMMERRAQER ARFEQEWRQS MEKLERERIM  180
LEQAWREREE QRRMREESRA EKRDQLLTTL LNKLIQDEL*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
171112KKLKRLAGDRSSEELLSDDEDDDDEESDVERPTKGKKKKTEK
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G38250.13e-17Trihelix family protein