PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm.model.AsparagusV1_09.135
Organism
Asparagus officinalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Asparagaceae; Asparagoideae; Asparagus
Family B3
Protein Properties Length: 136aa    MW: 15474.9 Da    PI: 6.2608
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm.model.AsparagusV1_09.135genomePhytozomeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B339.69.4e-1370132158
                                   EEEE-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEE.TTS-EEEEEE..EEETTE CS
                            B3   1 ffkvltpsdvlksgrlvlpkkfaeeh......ggkkeesktltled.esgrsWevkliyrkksgr 58 
                                   f k+ tpsdv+k++rlv+ k++ e+h      gg   es+ +++ed  +g++W+++++y+++s++
  evm.model.AsparagusV1_09.135  70 FNKTVTPSDVGKLNRLVIQKQHEERHlpalrdGGR--ESVLVSFEDtADGKVWRFRYSYWNSSQS 132
                                   89****************************86544..899******9999************986 PP
Sequence ? help Back to Top
Protein Sequence    Length: 136 aa     Download sequence    
MSYEDFTASL REKECRYAIY DFDFVTEENC QKSNIFFIAS TDNSSNNNND KAATQPDGRG  60
GASMSREHLF NKTVTPSDVG KLNRLVIQKQ HEERHLPALR DGGRESVLVS FEDTADGKVW  120
RFRYSYWNSS QSSKT*
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68840.24e-25RAV family protein