PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

evm.model.AsparagusV1_09.1443

Organism

Asparagus officinalis

Taxonomic ID

4686

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Asparagaceae; Asparagoideae; Asparagus

Family

GRAS

Protein Properties

Length: 659aa MW: 71205 Da PI: 6.8572

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
evm.model.AsparagusV1_09.1443	genome	Phytozome	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	190.2	1.4e-58	509	657	226	374
GRAS 226 evLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvvacegaer 305 ++L ++++ P++v++veqea+hn++ Fl rfleal+yysa+fdsl+a++p++s +r+k+E+ ++++ei+n+vaceg +r evm.model.AsparagusV1_09.1443 509 NLLAMIRDQAPNIVTLVEQEASHNGPHFLGRFLEALHYYSAIFDSLDATFPPDSAARAKLEQYIFQPEIRNIVACEGPAR 588 6899************************************************************************** PP GRAS 306 rerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374 +erhe+lekWr+ +e GFk v ls +a++q k ll ++ dgyr+ e++g+l+lgW+drp++++SaWr evm.model.AsparagusV1_09.1443 589 FERHERLEKWRKIMEGKGFKGVDLSPNAVAQSKILLGLYSCDGYRLTEDQGCLLLGWQDRPIIAASAWR 657 ******************************************************************8 PP

Sequence ? help Back to Top
Protein Sequence Length: 659 aa Download sequence
MRCNEKETLS LGALLSQAND PPPAPKSQHS MIDSLFGSKG SLKGIESSSC SKNLLPPPPS 60 PTDPASESNV DIAPSDPDLT TATTTTLLQS LKFDIDLDVE VQSPVDNSIW DSFLADQLDP 120 STDFMLISSP RRDYMMISSP RRDYMISSPK RDNMISSPKR EYMVITSPKR TNMSMNTSIN 180 SYSCGYAYGA QQAYGNPNPN TTTNTSSYTT KGKSQSPLHK VFNNSRAYNS SSSAGYEALL 240 DEYGMYSNLK DGSTTEVYEE AVGGMTATLL ECLGMPSLNA RYGESSEGDH QGYVNGIGIG 300 SSVDGGGGGL MGLNEGSLGS CKSETGEHGL LGPMTTCDQT EQEQDNGLHL SFHLLHARLP 360 PPSQFANAET SGSAARRVPS TISHPPTVSP LASLTRMPAR RLPPHYFACT APPFRPRPPL 420 PPPFSLPPLP LFRPASLAPP QNSTKSSTSA LAPTVKFAHP TSPPNQRHFW RFARAAGPTS 480 TSSHPRHSAI GYPVRPAILA GPGAPVPGNL LAMIRDQAPN IVTLVEQEAS HNGPHFLGRF 540 LEALHYYSAI FDSLDATFPP DSAARAKLEQ YIFQPEIRNI VACEGPARFE RHERLEKWRK 600 IMEGKGFKGV DLSPNAVAQS KILLGLYSCD GYRLTEDQGC LLLGWQDRPI IAASAWRC*

Sequence ? help Back to Top

Protein Sequence Length: 659 aa Download sequence

MRCNEKETLS LGALLSQAND PPPAPKSQHS MIDSLFGSKG SLKGIESSSC SKNLLPPPPS  60
PTDPASESNV DIAPSDPDLT TATTTTLLQS LKFDIDLDVE VQSPVDNSIW DSFLADQLDP  120
STDFMLISSP RRDYMMISSP RRDYMISSPK RDNMISSPKR EYMVITSPKR TNMSMNTSIN  180
SYSCGYAYGA QQAYGNPNPN TTTNTSSYTT KGKSQSPLHK VFNNSRAYNS SSSAGYEALL  240
DEYGMYSNLK DGSTTEVYEE AVGGMTATLL ECLGMPSLNA RYGESSEGDH QGYVNGIGIG  300
SSVDGGGGGL MGLNEGSLGS CKSETGEHGL LGPMTTCDQT EQEQDNGLHL SFHLLHARLP  360
PPSQFANAET SGSAARRVPS TISHPPTVSP LASLTRMPAR RLPPHYFACT APPFRPRPPL  420
PPPFSLPPLP LFRPASLAPP QNSTKSSTSA LAPTVKFAHP TSPPNQRHFW RFARAAGPTS  480
TSSHPRHSAI GYPVRPAILA GPGAPVPGNL LAMIRDQAPN IVTLVEQEAS HNGPHFLGRF  540
LEALHYYSAI FDSLDATFPP DSAARAKLEQ YIFQPEIRNI VACEGPARFE RHERLEKWRK  600
IMEGKGFKGV DLSPNAVAQS KILLGLYSCD GYRLTEDQGC LLLGWQDRPI IAASAWRC*

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G66350.1	9e-42	GRAS family protein