PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

evm.model.AsparagusV1_09.1527

Organism

Asparagus officinalis

Taxonomic ID

4686

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Asparagaceae; Asparagoideae; Asparagus

Family

C2H2

Protein Properties

Length: 256aa MW: 28556.3 Da PI: 9.2917

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
evm.model.AsparagusV1_09.1527	genome	Phytozome	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	16.4	2.5e-05	67	89	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y C+ C+k F r nL+ H r H evm.model.AsparagusV1_09.1527 67 YICEVCHKGFQRDQNLQLHRRGH 89 89*******************88 PP
2	zf-C2H2	14.2	0.00013	143	165	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kC +C+k++ +s+ k H + + evm.model.AsparagusV1_09.1527 143 WKCDKCSKRYAVQSDWKAHAKIC 165 58*****************9987 PP
3	zf-C2H2	11.2	0.0012	173	191	5	23
TTTEEESSHHHHHHHHHHT CS zf-C2H2 5 dCgksFsrksnLkrHirtH 23 dCg+ Fsrk+++ +H + evm.model.AsparagusV1_09.1527 173 DCGTIFSRKDSFITHRAFC 191 9**************8765 PP

Sequence ? help Back to Top
Protein Sequence Length: 256 aa Download sequence
MSNTSEEESH NTSHHQPLMG NCVAVPSKGD ATAAPAVKKR RSLPGNPDPD AEVVALSPRT 60 LLATNRYICE VCHKGFQRDQ NLQLHRRGHN LPWKLKQRTT TEVKKRVYVC PEVTCTHHDP 120 SRALGDLTGI KKHYSRKHGE KKWKCDKCSK RYAVQSDWKA HAKICGTKEY RCDCGTIFSR 180 KDSFITHRAF CDALAEENYR ANHGLADFLG LGESSYGANG VGLSYGDGQQ ESSRLRAIVQ 240 STLPWFPNEP LALPK*

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G50700.1	1e-111	C2H2 family protein