PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm.model.AsparagusV1_09.420
Organism
Asparagus officinalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Asparagaceae; Asparagoideae; Asparagus
Family FAR1
Protein Properties Length: 328aa    MW: 36821.6 Da    PI: 8.2141
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm.model.AsparagusV1_09.420genomePhytozomeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR190.42.5e-28108196289
                          FAR1   2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk.tekerrtraetrtgCkaklkvkkekdgkwevtkl 81 
                                   fY++YA+++GF+vr+sks +s+ ++++++r+fvCsk+g++++++    +k+rr+r+++r gCka+++v+++++g+w ++++
  evm.model.AsparagusV1_09.420 108 FYSAYAEQAGFRVRNSKSFTSRVDDTVIMRRFVCSKQGRPTKKDPFdLTKKRRNRVSSREGCKAMMQVNRRENGRWSISRC 188
                                   9**************************************99887655899******************************* PP

                          FAR1  82 eleHnHel 89 
                                   +leH H+l
  evm.model.AsparagusV1_09.420 189 VLEHCHPL 196
                                   ******98 PP
Sequence ? help Back to Top
Protein Sequence    Length: 328 aa     Download sequence    
MEGITLTTQM EFHNPHEEEE EVEPMISIQS QQSQLDERDI AIESMAQSSD TQQPHMDGHE  60
VMIESVARKS GSMAEGPMEE SGNLKISGEI QEPILGLEFE SPDAARAFYS AYAEQAGFRV  120
RNSKSFTSRV DDTVIMRRFV CSKQGRPTKK DPFDLTKKRR NRVSSREGCK AMMQVNRREN  180
GRWSISRCVL EHCHPLGIAS KPSLSAQKKL AKKPWELIRP ASTTESQQNG LGPGGVGIVT  240
LPDEYILRRW TRNAKDNILS YEHCTAFQSN CLKALNWRCN DLCRDAIRFA EEGATSAVIY  300
KVAKGALQNA FNEIFAAKRG SSFNRNR*
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G59470.23e-22FAR1 family protein