PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

evm.model.AsparagusV1_09.641

Organism

Asparagus officinalis

Taxonomic ID

4686

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Asparagaceae; Asparagoideae; Asparagus

Family

GATA

Protein Properties

Length: 239aa MW: 26865.9 Da PI: 8.6875

Description

GATA family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
evm.model.AsparagusV1_09.641	genome	Phytozome	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GATA	51.8	1.1e-16	180	212	1	33
GATA 1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkk 33 C +C t +Tp+WR gpdg tLCnaCG++y+ evm.model.AsparagusV1_09.641 180 CGHCMTEETPQWRTGPDGRGTLCNACGIKYKNS 212 9*****************************975 PP

Sequence ? help Back to Top
Protein Sequence Length: 239 aa Download sequence
MLSFETPELD DIVSSKEDAF GEPLCVPDDP LETIQIYPME ELKIFLDVLE TKRVRERENT 60 AGLMRSSQCE DAERVARRRG RPRKRREESV AFVLGQSRNP EESARKRGRP KKGAIDAIHS 120 RGIPKRKRNN NHGKNHAWSV KPPELSLESS AQHVSDDRSS DASSSDEASS PKSSEATRRC 180 GHCMTEETPQ WRTGPDGRGT LCNACGIKYK NSQKINNAVN LSCSNLIRER NRKTVYDD*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	78	84	RRGRPRK
2	78	87	RRGRPRKRRE

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G32890.1	3e-13	GATA family protein