PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm.model.AsparagusV1_09.76
Organism
Asparagus officinalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Asparagaceae; Asparagoideae; Asparagus
Family M-type_MADS
Protein Properties Length: 229aa    MW: 25680.9 Da    PI: 8.959
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm.model.AsparagusV1_09.76genomePhytozomeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF53.33.6e-171152344
                                 --SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTS CS
                       SRF-TF  3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstg 44
                                 i n+  r  t+ kRr g+lKK +ELSvLCd+ ++v++++++ 
  evm.model.AsparagusV1_09.76 11 IANDATRRATLKKRRRGLLKKVSELSVLCDVPACVVVYGPDE 52
                                 88999**********************************985 PP
Sequence ? help Back to Top
Protein Sequence    Length: 229 aa     Download sequence    
MARKKVTLAW IANDATRRAT LKKRRRGLLK KVSELSVLCD VPACVVVYGP DEAQPEVWPN  60
DAQAREVLVQ YKSMPESEQC KKRVDQSGYL NQQLFKIQEQ VRKQQRENWE LEMNIKLHEA  120
IAGKCNLMDV GVEDAAVLAR LIEEKMKTVK EKMAAVAATA AAATGEGKGE MLMDYDFGGR  180
SRCQPPAPAA VPPLRRVLGS IWELGVRGWI RDFIQFSLII MEDFSGYI*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1325RKKVTLAWIANDATRRATLKKRR
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G48670.11e-28M-type_MADS family protein