PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm.model.AsparagusV1_09.934
Organism
Asparagus officinalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Asparagaceae; Asparagoideae; Asparagus
Family C2H2
Protein Properties Length: 395aa    MW: 43786.9 Da    PI: 9.8643
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm.model.AsparagusV1_09.934genomePhytozomeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H219.72.3e-06169192123
                                   EEETTTTEEESSHHHHHHHHHH.T CS
                       zf-C2H2   1 ykCpdCgksFsrksnLkrHirt.H 23 
                                   ++C+dCg+ F+ +++L+ H+   H
  evm.model.AsparagusV1_09.934 169 FPCSDCGEIFTKSESLEIHQAIkH 192
                                   89******************9877 PP
Sequence ? help Back to Top
Protein Sequence    Length: 395 aa     Download sequence    
MPSLIERRKI SITPIQTSSP MAESKDSKKP IEKNSQKSKK KSFRSFFFSC KYHQTAVEVE  60
KKKQKPLKRI GWSGSLCNLR ESSKVMQRPE PTNSSESYSS SSVSSSNNNN LSASINSTLS  120
SSSSSSSSLG GSFKGMHLRR LSGCYECNMV VDPVTGISKV PSLRSNALFP CSDCGEIFTK  180
SESLEIHQAI KHAVSELGPE DSSRNIIEII FKSSWFKKQA PVYKMHRILK VHHAQKTITK  240
FENYRDSIKN KANKLSKKHQ RCIADGNELL RFYCTSLNCS LGLNSSTNLC ASNSKCDVCS  300
IIKDGFKPDE LGRIRTMATS GRAHDADKRE NKERAMLVCR VIAGRVKRNE EVNSEEFDSV  360
AGSSNAGVCS SLDELFVFDT KAILPCFVVI YSSF*
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75710.12e-87C2H2 family protein