PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

evm.model.AsparagusV1_10.100

Organism

Asparagus officinalis

Taxonomic ID

4686

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Asparagaceae; Asparagoideae; Asparagus

Family

MYB

Protein Properties

Length: 124aa MW: 14084.5 Da PI: 10.6682

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
evm.model.AsparagusV1_10.100	genome	Phytozome	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	58.1	2.1e-18	16	63	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+eEd +l+ +++++G g+W++ ++ g+ R++k+c++rw +yl evm.model.AsparagusV1_10.100 16 KGSWTPEEDMRLIAYIHKYGHGNWRALPKFAGLLRCGKSCRLRWINYL 63 799***************************99**********97 PP
2	Myb_DNA-binding	54	3.8e-17	69	114	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg++T+eE++ +++++ +lG++ W++Ia++++ gRt++++k+ w+++l evm.model.AsparagusV1_10.100 69 RGNFTKEEEDTIIKLHGLLGNK-WSKIASCLP-GRTDNEIKNVWNTHL 114 89******************.*****.**********996 PP

Sequence ? help Back to Top
Protein Sequence Length: 124 aa Download sequence
MGRGRAPCCA KVGLNKGSWT PEEDMRLIAY IHKYGHGNWR ALPKFAGLLR CGKSCRLRWI 60 NYLRPDIKRG NFTKEEEDTI IKLHGLLGNK WSKIASCLPG RTDNEIKNVW NTHLKKRLVL 120 PTG*

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G79180.1	5e-69	MYB family protein