PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

evm.model.AsparagusV1_10.1487

Organism

Asparagus officinalis

Taxonomic ID

4686

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Asparagaceae; Asparagoideae; Asparagus

Family

LBD

Protein Properties

Length: 185aa MW: 19869.3 Da PI: 7.405

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
evm.model.AsparagusV1_10.1487	genome	Phytozome	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	125.3	3e-39	7	107	1	100
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgv 79 +C aCk+lrrkC+++C++apyf +eq +++fa++hk+FGasn +kll++lp ++r++a+ s+ yeA+ar++dP+yG+v++ evm.model.AsparagusV1_10.1487 7 PCGACKFLRRKCVQGCIFAPYFSHEQgAAHFAAIHKVFGASNASKLLSHLPATDRSEAALSISYEAQARLQDPIYGCVSH 86 7***********************89************************************************ PP DUF260 80 ilklqqqleqlkaelallkee 100 i++lqqq+ l+a+l++lk++ evm.model.AsparagusV1_10.1487 87 IFALQQQVVMLQAQLSSLKAQ 107 **************99876 PP

Sequence ? help Back to Top
Protein Sequence Length: 185 aa Download sequence
MSGFGSPCGA CKFLRRKCVQ GCIFAPYFSH EQGAAHFAAI HKVFGASNAS KLLSHLPATD 60 RSEAALSISY EAQARLQDPI YGCVSHIFAL QQQVVMLQAQ LSSLKAQTAK DSANSSTSAP 120 INASMNLESR SCYNENNNNQ PNFISSGCYG DLEEGSSCSM ASHDGRVTDM EDLRSVAYAW 180 LKKI*

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G58190.1	1e-53	LBD family protein