PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

evm.model.AsparagusV1_10.1633

Organism

Asparagus officinalis

Taxonomic ID

4686

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Asparagaceae; Asparagoideae; Asparagus

Family

MYB

Protein Properties

Length: 210aa MW: 23334.7 Da PI: 11.1299

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
evm.model.AsparagusV1_10.1633	genome	Phytozome	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	53.4	6e-17	15	62	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg+WT+eEd+ lvd+++ G g+W++ ++ g+ R++k+c++rw +yl evm.model.AsparagusV1_10.1633 15 RGPWTPEEDKVLVDYIQANGHGSWRSLPKLAGLQRCGKSCRLRWANYL 62 89********************************************97 PP
2	Myb_DNA-binding	48.1	2.7e-15	68	113	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg++T++E++ +++++ G++ W++Ia+ ++ gRt++++k++w+++l evm.model.AsparagusV1_10.1633 68 RGPFTEDEQKSIIQLHGIVGNK-WSAIAAQLP-GRTDNEIKNFWNTHL 113 89******************.*****.**********996 PP

Sequence ? help Back to Top
Protein Sequence Length: 210 aa Download sequence
MGRTPCCDKQ LGLKRGPWTP EEDKVLVDYI QANGHGSWRS LPKLAGLQRC GKSCRLRWAN 60 YLRPDIKRGP FTEDEQKSII QLHGIVGNKW SAIAAQLPGR TDNEIKNFWN THLKKRLQRM 120 GINPDTCSPS PPTTNSSTSA STTTSSTWRN GRALALKLRL ASTSALVTLA PTMNVSMSTY 180 SSEYGTPPWA KRSAEPGRPT MKRRRRALQ*

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G61250.1	1e-74	MYB family protein