PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm.model.AsparagusV1_10.1755
Organism
Asparagus officinalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Asparagaceae; Asparagoideae; Asparagus
Family ARR-B
Protein Properties Length: 534aa    MW: 59916.7 Da    PI: 6.0411
Description ARR-B family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm.model.AsparagusV1_10.1755genomePhytozomeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like76.53.5e-24190243155
                        G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                                    k r++W+ +LH++Fv+av+++ G +k  Pk+il+lm+++gLt+e+v SHLQkYRl
  evm.model.AsparagusV1_10.1755 190 KSRVVWSVDLHQKFVNAVKEI-GFDKVGPKKILDLMNIPGLTRENVGSHLQKYRL 243
                                    68*******************.9*******************************8 PP
2Myb_DNA-binding383.8e-12192242148
                                    TSSS-HHHHHHHHHHHHHTTTT..-HHHHHHHHT.TTS-HHHHHHHHHHHT CS
                Myb_DNA-binding   1 rgrWTteEdellvdavkqlGgg..tWktIartmg.kgRtlkqcksrwqkyl 48 
                                    r  W+ ++++++v+avk+ G +   +k+I   m+  g+t++++ s++qky+
  evm.model.AsparagusV1_10.1755 192 RVVWSVDLHQKFVNAVKEIGFDkvGPKKILDLMNiPGLTRENVGSHLQKYR 242
                                    678***********************************************7 PP
3Response_reg79.89.4e-27161241109
                                    EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEE CS
                   Response_reg   1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd..pDlillDiempgmdGlellkeireeepklpiivvt 78 
                                    vl+vdD+p+ +++l+++l+k  y ev+++  ++ al ll+ ++  +D+++ D++mp+mdG+ell++   e  +lp+i+++
  evm.model.AsparagusV1_10.1755  16 VLVVDDDPTWMKILEKMLRKCSY-EVTTCGLATVALSLLRGRRdkFDIVISDVNMPDMDGFELLEQVGLEM-DLPVIMMS 93 
                                    89*********************.***************766666**********************6644.8******* PP

                                    STTTHHHHHHHHHTTESEEEESS--HHHHHH CS
                   Response_reg  79 ahgeeedalealkaGakdflsKpfdpeelvk 109
                                     +ge + + + ++ Ga d+l Kp+ ++el++
  evm.model.AsparagusV1_10.1755  94 VNGETSRVMKGVQHGACDYLLKPIRMKELRN 124
                                    ****************************987 PP
Sequence ? help Back to Top
Protein Sequence    Length: 534 aa     Download sequence    
MENPSRAEAF PVGLRVLVVD DDPTWMKILE KMLRKCSYEV TTCGLATVAL SLLRGRRDKF  60
DIVISDVNMP DMDGFELLEQ VGLEMDLPVI MMSVNGETSR VMKGVQHGAC DYLLKPIRMK  120
ELRNIWQHVY RKKMHELKEV EDHDISEDIQ MSRSFSEDFD DRQGCLGKRK DLDSKETSDQ  180
ECNDTAAVKK SRVVWSVDLH QKFVNAVKEI GFDKVGPKKI LDLMNIPGLT RENVGSHLQK  240
YRLYLSRLQK QHEERSSVKN IQPDFNPTGP RANFQNSATM NQISASGRYV PITQNFQAYN  300
RTPAIFANNV KSTVALRLKD QMGTISSVET STPKQEPWSN GIPLTSCVQR SKHDHEPNSS  360
LEDCSHLPLT GQIHQTTTSQ SLPPTSIISV ACNPEQKTAS TRTKPALNST VVLPVICTSD  420
SVSVQVERGS VDSQGFGVKH ETDGSKIWMS PLREPRAKNE KDFVSLPEES PLSSLQNIGC  480
FENIGLNSMD IFQHTGSTSL TGFHSNWYDG LEFNGDYSFD PVEYQVTDDC LFV*
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G67710.11e-105ARR-B family protein