PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

evm.model.AsparagusV1_10.1876

Organism

Asparagus officinalis

Taxonomic ID

4686

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Asparagaceae; Asparagoideae; Asparagus

Family

MYB

Protein Properties

Length: 343aa MW: 37959.9 Da PI: 10.705

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
evm.model.AsparagusV1_10.1876	genome	Phytozome	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	56.4	6.6e-18	47	94	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT++Ed+ll++ v +G g+W++++r g++R++k+c++rw +yl evm.model.AsparagusV1_10.1876 47 KGPWTPQEDKLLIEHVDIHGEGRWNSVSRLTGLKRSGKSCRLRWVNYL 94 79********************************************97 PP
2	Myb_DNA-binding	52.3	1.3e-16	100	144	1	47
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 rg+ T+ E+ +++++++++G++ W+tIar ++ gRt++++k++w+++ evm.model.AsparagusV1_10.1876 100 RGKITPHEETIILELHARWGNR-WSTIARSLP-GRTDNEIKNYWRTH 144 8999****************.*****.**********97 PP

Sequence ? help Back to Top
Protein Sequence Length: 343 aa Download sequence
MQDASGSGML MIKTGDTRYR AMKPAALLLM EAGQFGWSSG LDDGWRKGPW TPQEDKLLIE 60 HVDIHGEGRW NSVSRLTGLK RSGKSCRLRW VNYLRPDLKR GKITPHEETI ILELHARWGN 120 RWSTIARSLP GRTDNEIKNY WRTHFKKAKP TKASDRAQAR ARFLRQQQQG LQHNDDNQQQ 180 QHQHQLQLQE AERAIKGMMP QAQVAANIAQ EMQELAIMFP AFSMFQAADC SAGSTSEEGS 240 AWGSLWNLDD IGPGRPGLTA TFVIVGPRVE LTRPGSKSSA GSRPVTGPDP DARPSSGSGP 300 IRASTRRPEL GPKAWFDPGF GAFPGPERAQ ARPSPIRTPG WA*

Sequence ? help Back to Top

Protein Sequence Length: 343 aa Download sequence

MQDASGSGML MIKTGDTRYR AMKPAALLLM EAGQFGWSSG LDDGWRKGPW TPQEDKLLIE  60
HVDIHGEGRW NSVSRLTGLK RSGKSCRLRW VNYLRPDLKR GKITPHEETI ILELHARWGN  120
RWSTIARSLP GRTDNEIKNY WRTHFKKAKP TKASDRAQAR ARFLRQQQQG LQHNDDNQQQ  180
QHQHQLQLQE AERAIKGMMP QAQVAANIAQ EMQELAIMFP AFSMFQAADC SAGSTSEEGS  240
AWGSLWNLDD IGPGRPGLTA TFVIVGPRVE LTRPGSKSSA GSRPVTGPDP DARPSSGSGP  300
IRASTRRPEL GPKAWFDPGF GAFPGPERAQ ARPSPIRTPG WA*

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G24310.1	3e-68	MYB family protein