PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

evm.model.AsparagusV1_10.1935

Organism

Asparagus officinalis

Taxonomic ID

4686

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Asparagaceae; Asparagoideae; Asparagus

Family

HB-other

Protein Properties

Length: 1214aa MW: 137325 Da PI: 8.9927

Description

HB-other family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
evm.model.AsparagusV1_10.1935	genome	Phytozome	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	42.3	1.3e-13	14	65	6	57
S--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS Homeobox 6 tftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57 + t+ ql+ Le+++ +++yp+++++ee A++l+Lt +q+++WF rR ke++ evm.model.AsparagusV1_10.1935 14 KKTPFQLQFLEKYYLEEKYPKQTAMEEYAASLNLTYKQIRTWFVERRRKERR 65 56999*********************************************97 PP

Sequence ? help Back to Top
Protein Sequence Length: 1214 aa Download sequence
MMSSAKRKTM SQQKKTPFQL QFLEKYYLEE KYPKQTAMEE YAASLNLTYK QIRTWFVERR 60 RKERRENEVR GCNKGLLEGL HKFGYIKSRK NTNVISGLCR NRSKSMISSK YSMAISQELG 120 HSMDTVLFTS NESCKKNRKK PTSRKNCKNS SDMGDMRYNT FSKCHQPCNH KLTVLRGKCC 180 EVANNYQHIG QKNRQVCLQS LFSKDYILKR IFRKDGPPLG VEFDSLPSRS SNFLTASETR 240 LSYRDSQRVP KRKKLLYHTV ESGLEDVSTT NYGIGKGLMT VWRATNHNKV NCPSKINILD 300 GGAAQMPFNS SFKETLSRAS KGMQQRKLVP KQHSWQRKFQ EKRRPPQKRR KVPCSKDANQ 360 KRPPWTTCKL AIQDPILEQS NALAQLVDDE ELELRDLQAG PKPLRCSAHF ASDGRHDCPL 420 CKDLLARFPP EAVKMKQPFC TRPWDTSPEL VKKFFKVLRF LYSNAATIEI HPFTIDELAH 480 AFTDKDSMLL GKIHVALLKL LLLDVQREVT AGSISRAPKD GRFLGFLHFV REHEIDVHVW 540 SQSLNALTWA EVLRQVLTAA GFGSKSNSAR REIFSKERNQ MVKYGLRPRT LKGELFTILS 600 DQGIGGLKVS ELAKTSQIVA LDLPCTKEET EQLICLTLSS DITLFEKIAP AAYRLRINPN 660 IKGKEEHQSE SEDSGSVDDD SGGNSGSSSD ESDGSEESNS ASHGQRIVKY RHRRKRTGQK 720 VTEYNEIDES YSGEACVLGL MEGEYSDLSI DEKLEALTAL VDLAGACSSL GIEERTGDIP 780 ETVSSMLYHG SGAKIKKSLM DPHLLSQNLE IVSQASKKGQ SSLTKSSIAK DKSGHDLHAM 840 QSICLGSDRR YNNYWLFLGP CDIIDPGHRQ VYFESSEDGH WEVINTPQAL DALLSALDCR 900 GTREARLFGS LDKREAFLCQ AMNDCTATDY ISRQKSGPSD LDNNSGGGSS PISDVDNIQD 960 SVDSMKRHSS ASCAVAVELG KSRKEKKQKW DRLQAFDKWV WNDFYSDLSA VKRSKRSYME 1020 SLARCEQCHD LYWRDEKHCR ICHTTFELDF DLEEKYAIHT ATCRVTEDSC DFPKYKVLPS 1080 QLQALKAATH AIEACMPKVA LSDAWSRSAH KLWVKRLKRT SSLPEFLQVL ADFVGAINEE 1140 WLYECASALG TSTALDEVIV YFQTMPQTTS AVALWMVKLD ALIASQLEKV QSEQVAQIAE 1200 KRPQPKRRRI CTM*

Sequence ? help Back to Top

Protein Sequence Length: 1214 aa Download sequence

MMSSAKRKTM SQQKKTPFQL QFLEKYYLEE KYPKQTAMEE YAASLNLTYK QIRTWFVERR  60
RKERRENEVR GCNKGLLEGL HKFGYIKSRK NTNVISGLCR NRSKSMISSK YSMAISQELG  120
HSMDTVLFTS NESCKKNRKK PTSRKNCKNS SDMGDMRYNT FSKCHQPCNH KLTVLRGKCC  180
EVANNYQHIG QKNRQVCLQS LFSKDYILKR IFRKDGPPLG VEFDSLPSRS SNFLTASETR  240
LSYRDSQRVP KRKKLLYHTV ESGLEDVSTT NYGIGKGLMT VWRATNHNKV NCPSKINILD  300
GGAAQMPFNS SFKETLSRAS KGMQQRKLVP KQHSWQRKFQ EKRRPPQKRR KVPCSKDANQ  360
KRPPWTTCKL AIQDPILEQS NALAQLVDDE ELELRDLQAG PKPLRCSAHF ASDGRHDCPL  420
CKDLLARFPP EAVKMKQPFC TRPWDTSPEL VKKFFKVLRF LYSNAATIEI HPFTIDELAH  480
AFTDKDSMLL GKIHVALLKL LLLDVQREVT AGSISRAPKD GRFLGFLHFV REHEIDVHVW  540
SQSLNALTWA EVLRQVLTAA GFGSKSNSAR REIFSKERNQ MVKYGLRPRT LKGELFTILS  600
DQGIGGLKVS ELAKTSQIVA LDLPCTKEET EQLICLTLSS DITLFEKIAP AAYRLRINPN  660
IKGKEEHQSE SEDSGSVDDD SGGNSGSSSD ESDGSEESNS ASHGQRIVKY RHRRKRTGQK  720
VTEYNEIDES YSGEACVLGL MEGEYSDLSI DEKLEALTAL VDLAGACSSL GIEERTGDIP  780
ETVSSMLYHG SGAKIKKSLM DPHLLSQNLE IVSQASKKGQ SSLTKSSIAK DKSGHDLHAM  840
QSICLGSDRR YNNYWLFLGP CDIIDPGHRQ VYFESSEDGH WEVINTPQAL DALLSALDCR  900
GTREARLFGS LDKREAFLCQ AMNDCTATDY ISRQKSGPSD LDNNSGGGSS PISDVDNIQD  960
SVDSMKRHSS ASCAVAVELG KSRKEKKQKW DRLQAFDKWV WNDFYSDLSA VKRSKRSYME  1020
SLARCEQCHD LYWRDEKHCR ICHTTFELDF DLEEKYAIHT ATCRVTEDSC DFPKYKVLPS  1080
QLQALKAATH AIEACMPKVA LSDAWSRSAH KLWVKRLKRT SSLPEFLQVL ADFVGAINEE  1140
WLYECASALG TSTALDEVIV YFQTMPQTTS AVALWMVKLD ALIASQLEKV QSEQVAQIAE  1200
KRPQPKRRRI CTM*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	59	66	RRRKERRE
2	1206	1210	KRRRI

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G12750.1	1e-144	HB-other family protein