PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm.model.AsparagusV1_10.1945
Organism
Asparagus officinalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Asparagaceae; Asparagoideae; Asparagus
Family MYB
Protein Properties Length: 278aa    MW: 31490.2 Da    PI: 6.2422
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm.model.AsparagusV1_10.1945genomePhytozomeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding521.7e-161461148
                                   TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
                Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                                   +g+WTteEd +l  +++ +G g+W++ +++ g+ R++k+c++rw +yl
  evm.model.AsparagusV1_10.1945 14 KGPWTTEEDHILTSYIQTHGYGNWRALPKRAGLLRCGKSCRLRWTNYL 61
                                   79******************************99************97 PP
2Myb_DNA-binding52.21.4e-1667112148
                                    TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
                Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                                    rg++T+eE++l+++++++lG++ W++Ia+ ++  Rt++++k+ w+++l
  evm.model.AsparagusV1_10.1945  67 RGNFTKEEEDLIINLHEKLGNK-WSAIASNLP-SRTDNEIKNVWHTHL 112
                                    89********************.*********.************986 PP
Sequence ? help Back to Top
Protein Sequence    Length: 278 aa     Download sequence    
MVRAPCCEKV GLKKGPWTTE EDHILTSYIQ THGYGNWRAL PKRAGLLRCG KSCRLRWTNY  60
LRPDIKRGNF TKEEEDLIIN LHEKLGNKWS AIASNLPSRT DNEIKNVWHT HLKKRANHYI  120
EEPKRKPRRP KSKTSIRVEP KPVTIATSDP STATQTSSIP SSTPTSPGWS HCDISSSFTN  180
ETRNMGASYA FTNNESMDSS SAQDLVEFDE SLLNEALSME NWDDVPMDAK ATAQEQSVLN  240
HFGGELLCSD SFCEDENIDF WLRTFMESVE LHDLPEL*
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G23250.18e-70MYB family protein