PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

evm.model.AsparagusV1_10.528

Organism

Asparagus officinalis

Taxonomic ID

4686

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Asparagaceae; Asparagoideae; Asparagus

Family

C3H

Protein Properties

Length: 420aa MW: 46110 Da PI: 8.2945

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
evm.model.AsparagusV1_10.528	genome	Phytozome	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	32.9	1.1e-10	27	53	1	27
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 ++++ C +++rtG C++G +C+F+H+p evm.model.AsparagusV1_10.528 27 PGEPDCAYYMRTGMCRFGMTCRFNHPP 53 5789*********************97 PP
2	zf-CCCH	39.3	1.1e-12	74	98	3	27
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 +++C+++++tGtCk+G++CkF+H++ evm.model.AsparagusV1_10.528 74 QPECQYYLKTGTCKFGATCKFHHPK 98 799********************96 PP
3	zf-CCCH	36.2	1e-11	120	144	3	27
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 +++C +++rtG+Ck+G++CkF+H++ evm.model.AsparagusV1_10.528 120 EKECAYYLRTGQCKFGNTCKFHHPQ 144 679********************97 PP
4	zf-CCCH	38.6	1.8e-12	270	295	2	27
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 ++++C+f+++tG Ck+G+ C+F+H++ evm.model.AsparagusV1_10.528 270 DQPECQFYMKTGDCKFGAVCRFHHPR 295 689*********************96 PP
5	zf-CCCH	39	1.3e-12	315	341	1	27
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 ++++lC f++r+G Ck+G++CkF H++ evm.model.AsparagusV1_10.528 315 PGEPLCIFYSRYGVCKFGPNCKFDHPM 341 589**********************95 PP

Sequence ? help Back to Top
Protein Sequence Length: 420 aa Download sequence
MHYCETLWQM SLRGTGSVEG GQYPERPGEP DCAYYMRTGM CRFGMTCRFN HPPDRNLVIA 60 AERMKGGYPE RVGQPECQYY LKTGTCKFGA TCKFHHPKDK AGIAGRVQLN VLGYPLRPNE 120 KECAYYLRTG QCKFGNTCKF HHPQPSNAMV SLSGSPVYTS VHSPTPAGQQ SYLRTSFVPS 180 PRWQGPSSYA QLILPQGLVQ VPSWNTFSGQ LGLASSSEGQ RTPGSNQYYG TSHQSETAAG 240 EQRAVSYHSG SVPVGQYAMQ TENIFPERPD QPECQFYMKT GDCKFGAVCR FHHPRERFIP 300 APDCVLSPLG LPLRPGEPLC IFYSRYGVCK FGPNCKFDHP MATPMGILAY SLSTSSSPDV 360 PVVRRLLESS AAPPVLTLSS ETHVEAVPGS RRQSLSGDEN IQSEGSHTNQ SIGQVSSFS*

Sequence ? help Back to Top

Protein Sequence Length: 420 aa Download sequence

MHYCETLWQM SLRGTGSVEG GQYPERPGEP DCAYYMRTGM CRFGMTCRFN HPPDRNLVIA  60
AERMKGGYPE RVGQPECQYY LKTGTCKFGA TCKFHHPKDK AGIAGRVQLN VLGYPLRPNE  120
KECAYYLRTG QCKFGNTCKF HHPQPSNAMV SLSGSPVYTS VHSPTPAGQQ SYLRTSFVPS  180
PRWQGPSSYA QLILPQGLVQ VPSWNTFSGQ LGLASSSEGQ RTPGSNQYYG TSHQSETAAG  240
EQRAVSYHSG SVPVGQYAMQ TENIFPERPD QPECQFYMKT GDCKFGAVCR FHHPRERFIP  300
APDCVLSPLG LPLRPGEPLC IFYSRYGVCK FGPNCKFDHP MATPMGILAY SLSTSSSPDV  360
PVVRRLLESS AAPPVLTLSS ETHVEAVPGS RRQSLSGDEN IQSEGSHTNQ SIGQVSSFS*

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G02830.1	1e-149	C3H family protein