PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

evm.model.AsparagusV1_10.637

Organism

Asparagus officinalis

Taxonomic ID

4686

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Asparagaceae; Asparagoideae; Asparagus

Family

GATA

Protein Properties

Length: 573aa MW: 63896.7 Da PI: 8.3533

Description

GATA family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
evm.model.AsparagusV1_10.637	genome	Phytozome	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GATA	50.6	2.6e-16	7	41	1	35
GATA 1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 C++Cg+t+TplWR+gp ++ LCnaCG ++r kg+ evm.model.AsparagusV1_10.637 7 CRHCGVTTTPLWRNGPPDKPVLCNACGSRWRTKGS 41 **************55555*********997 PP

Sequence ? help Back to Top
Protein Sequence Length: 573 aa Download sequence
MGKHGPCRHC GVTTTPLWRN GPPDKPVLCN ACGSRWRTKG SLTNYTPLHA REPIDQEEFK 60 MAKPKVIPFK PKEKRLQKIK QSCGSVEKRH EIPYSDQNFR KILEGDPSNR SSSGSATSYS 120 ESCAHFGTTE ASDLTGSAQS NVWESQVPSK KRTCILRPKP TPVEKLTKDL YTIMHKQQSS 180 YLSSSEEDLL YEGETPIGSF EIGNGSFLLR YPNPKAIEEE SEASSFPIDK SCIANEAYSG 240 SASFPVHSES KGMLLAAVGI EKLNNSTINV AQGNVKRDIS CTDKLPLLRD RGSPLGFTDL 300 KDIVNFEVSM RHMTDEERQR LMKYLPSSDT AKYPESLRTM FNSSQFMETF SYFQQLLREG 360 IFESSISGTD NGDYRILKRL VLQNFSRPTW VEHYKRLKDI KIKQNFGRKE IASRSISLEH 420 SNFTSLKRAG DSQSLHLSEL HSAVKSPKRL AKSGGSGTNP QSIVSLQPNS TNSRTIYDAE 480 EFVDNDGTCF SPRTIFATPE RSSLLCSLQF TDDSSDHDLL LDIPNNSSFP DAELLYNPRN 540 QKRGCRNNLC AASGVIADGE ESLSSFSSQK PR*

Sequence ? help Back to Top

Protein Sequence Length: 573 aa Download sequence

MGKHGPCRHC GVTTTPLWRN GPPDKPVLCN ACGSRWRTKG SLTNYTPLHA REPIDQEEFK  60
MAKPKVIPFK PKEKRLQKIK QSCGSVEKRH EIPYSDQNFR KILEGDPSNR SSSGSATSYS  120
ESCAHFGTTE ASDLTGSAQS NVWESQVPSK KRTCILRPKP TPVEKLTKDL YTIMHKQQSS  180
YLSSSEEDLL YEGETPIGSF EIGNGSFLLR YPNPKAIEEE SEASSFPIDK SCIANEAYSG  240
SASFPVHSES KGMLLAAVGI EKLNNSTINV AQGNVKRDIS CTDKLPLLRD RGSPLGFTDL  300
KDIVNFEVSM RHMTDEERQR LMKYLPSSDT AKYPESLRTM FNSSQFMETF SYFQQLLREG  360
IFESSISGTD NGDYRILKRL VLQNFSRPTW VEHYKRLKDI KIKQNFGRKE IASRSISLEH  420
SNFTSLKRAG DSQSLHLSEL HSAVKSPKRL AKSGGSGTNP QSIVSLQPNS TNSRTIYDAE  480
EFVDNDGTCF SPRTIFATPE RSSLLCSLQF TDDSSDHDLL LDIPNNSSFP DAELLYNPRN  540
QKRGCRNNLC AASGVIADGE ESLSSFSSQK PR*

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G17570.3	9e-97	GATA family protein