PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

evm.model.AsparagusV1_10.926

Organism

Asparagus officinalis

Taxonomic ID

4686

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Asparagaceae; Asparagoideae; Asparagus

Family

Whirly

Protein Properties

Length: 346aa MW: 37351.5 Da PI: 6.5182

Description

Whirly family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
evm.model.AsparagusV1_10.926	genome	Phytozome	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Whirly	111.2	7.8e-35	217	303	52	138
Whirly 52 kqsfalsatevaelvdlaskesceffhdpaakgsneGkvrkalkvePlpdGsGlfvnlsvtnslvkgnesfsvPvskaefa 132 + falsatev++l++l++ +scef+hdp++k+s eG+v+k+l v P+ d G+f+nlsv ns +k+ e+fsvPv+kaefa evm.model.AsparagusV1_10.926 217 EKMFALSATEVGSLISLGPTDSCEFLHDPSMKSSLEGQVKKTLTVSPIHDSGGYFFNLSVLNSAQKTTERFSVPVTKAEFA 297 468**************************************************************************** PP Whirly 133 vlrsll 138 v+r+++ evm.model.AsparagusV1_10.926 298 VMRTAF 303 *998 PP

Sequence ? help Back to Top
Protein Sequence Length: 346 aa Download sequence
MISGYEHNGF ADRAIEVFVE MRKGVVPDSV TLVGVLAACS QSASLGLGKW ADGNQLAGRV 60 LPQKVCNVND ASWLSNFTSQ HVFSTASSGV MNNGNYAGRT YADFSIFKGK AALLVSPVPP 120 KFSKIDVLSP PEALSVFIFI SPTRPSPVLS PHEALSIFIF ISPIRPSPVT RANSSSFASL 180 QKTIFALALA LTTTENGLTG DEYEDVKTRT GEEAYEEKMF ALSATEVGSL ISLGPTDSCE 240 FLHDPSMKSS LEGQVKKTLT VSPIHDSGGY FFNLSVLNSA QKTTERFSVP VTKAEFAVMR 300 TAFGFALPHI MGWDRVVTPQ FVNTSNSAQL KEPTMRLTPD FEWGR*

Sequence ? help Back to Top

Protein Sequence Length: 346 aa Download sequence

MISGYEHNGF ADRAIEVFVE MRKGVVPDSV TLVGVLAACS QSASLGLGKW ADGNQLAGRV  60
LPQKVCNVND ASWLSNFTSQ HVFSTASSGV MNNGNYAGRT YADFSIFKGK AALLVSPVPP  120
KFSKIDVLSP PEALSVFIFI SPTRPSPVLS PHEALSIFIF ISPIRPSPVT RANSSSFASL  180
QKTIFALALA LTTTENGLTG DEYEDVKTRT GEEAYEEKMF ALSATEVGSL ISLGPTDSCE  240
FLHDPSMKSS LEGQVKKTLT VSPIHDSGGY FFNLSVLNSA QKTTERFSVP VTKAEFAVMR  300
TAFGFALPHI MGWDRVVTPQ FVNTSNSAQL KEPTMRLTPD FEWGR*

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G71260.1	6e-43	Whirly family protein