PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm.model.AsparagusV1_Unassigned.1034
Organism
Asparagus officinalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Asparagaceae; Asparagoideae; Asparagus
Family LSD
Protein Properties Length: 109aa    MW: 11477.2 Da    PI: 9.0611
Description LSD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm.model.AsparagusV1_Unassigned.1034genomePhytozomeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-LSD147.62.7e-152347125
                                zf-LSD1  1 CggCrtlLsYPrGApsVRCalCdtV 25
                                           C +Crt+L+YP+GApsV+Ca+C+ V
  evm.model.AsparagusV1_Unassigned.1034 23 CAQCRTTLMYPYGAPSVKCAICHYV 47
                                           **********************987 PP
Sequence ? help Back to Top
Protein Sequence    Length: 109 aa     Download sequence    
MVVNGGHQRP CKEDGNQVAH VSCAQCRTTL MYPYGAPSVK CAICHYVTNV GMNMRMPIPV  60
NRPNGATTVP QSTSASNSQT VVVENPMSRD ASGKLVSNVV VGVTTDKK*
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G20380.89e-35LSD family protein