PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm.model.AsparagusV1_Unassigned.1052
Organism
Asparagus officinalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Asparagaceae; Asparagoideae; Asparagus
Family SBP
Protein Properties Length: 256aa    MW: 27935.4 Da    PI: 9.3478
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm.model.AsparagusV1_Unassigned.1052genomePhytozomeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP135.31.9e-4242119178
                                            --SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT----- CS
                                    SBP   1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhner 72 
                                            +CqvegC++dls ak y+ rhkvC +hsk+p+vlv+gleqrfCqqCsrfh+l efD++krsCrrrLa+hner
  evm.model.AsparagusV1_Unassigned.1052  42 RCQVEGCSVDLSGAKAYYGRHKVCGMHSKSPMVLVAGLEQRFCQQCSRFHQLPEFDQDKRSCRRRLAGHNER 113
                                            6*********************************************************************** PP

                                            --S--- CS
                                    SBP  73 rrkkqa 78 
                                            rrk+q+
  evm.model.AsparagusV1_Unassigned.1052 114 RRKPQH 119
                                            ***986 PP
Sequence ? help Back to Top
Protein Sequence    Length: 256 aa     Download sequence    
MEMGSSSLQI STTESLNGLK LRSSSSSSSS SSSKSLTKQP PRCQVEGCSV DLSGAKAYYG  60
RHKVCGMHSK SPMVLVAGLE QRFCQQCSRF HQLPEFDQDK RSCRRRLAGH NERRRKPQHS  120
SLASQMPSSP SDDGNSRWGG FLMNFAYPQL AGIMASDQTT SRKWQGGTQL PASEGPGVFS  180
LLSAQPRGNS LTGNPTPTDS TSTIFDGAPI ISFDGKSHPL DFKAPEALEL MWMPNELKQA  240
LERKRQFMQL DDVGN*
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G42200.11e-43SBP family protein