PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

evm.model.AsparagusV1_Unassigned.106

Organism

Asparagus officinalis

Taxonomic ID

4686

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Asparagaceae; Asparagoideae; Asparagus

Family

GATA

Protein Properties

Length: 543aa MW: 61259.7 Da PI: 6.9245

Description

GATA family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
evm.model.AsparagusV1_Unassigned.106	genome	Phytozome	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GATA	45.4	1.1e-14	7	41	1	35
GATA 1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 C +Cg+t+TplWR+gp ++ LCnaCG ++r kg+ evm.model.AsparagusV1_Unassigned.106 7 CCHCGVTTTPLWRNGPPDKPVLCNACGSRWRTKGS 41 99************55555*********997 PP

Sequence ? help Back to Top
Protein Sequence Length: 543 aa Download sequence
MGKHGPCCHC GVTTTPLWRN GPPDKPVLCN ACGSRWRTKG SLINYTPLHA RELIEQEGLE 60 VCKVKPIPVK PKEKKLQKIK QSSGALENKR EIPYSDQNFR KMLERDTSNW SSSGSATSYS 120 ESCAHFATNE VSDLTGSAQS NVWDPQVPSK RRTCVVRQKP TPVEKLTKDL YIIMHEQQSS 180 YLSSSEEDLL YEGETPVGSF EIGNGSVLLR YPNTKAIEEE SEASSLPKSC IINEDESKGT 240 KFSGVGMEKF RKPAAHMAQC QVKRDKSSDR LHILQDRDSP LCSTDLKDIV DFEVLMRHMT 300 DEEQQRLMKY LPSLDTAKYP ESLRSMFNSS QFVETLSYFQ QLLQEGIFDL SISGTDNEDY 360 ITLKRLVLQN FSRSTWVEHY KRLKDIKKKQ YVGGKEVVTD SSYHGHSNFT RLKRSMDAQN 420 LKFSEPDSAM RSPKRLASSV FDVEDFVDND GTCFSPRTIF ATPPERSSSL LCSLQFTDDN 480 SDHGLLLDVP SSSSFPEAEL LYYTSNPKRN NSSSESRIFG DGEESLSNLP VSSFNSQKPR 540 QR*

Sequence ? help Back to Top

Protein Sequence Length: 543 aa Download sequence

MGKHGPCCHC GVTTTPLWRN GPPDKPVLCN ACGSRWRTKG SLINYTPLHA RELIEQEGLE  60
VCKVKPIPVK PKEKKLQKIK QSSGALENKR EIPYSDQNFR KMLERDTSNW SSSGSATSYS  120
ESCAHFATNE VSDLTGSAQS NVWDPQVPSK RRTCVVRQKP TPVEKLTKDL YIIMHEQQSS  180
YLSSSEEDLL YEGETPVGSF EIGNGSVLLR YPNTKAIEEE SEASSLPKSC IINEDESKGT  240
KFSGVGMEKF RKPAAHMAQC QVKRDKSSDR LHILQDRDSP LCSTDLKDIV DFEVLMRHMT  300
DEEQQRLMKY LPSLDTAKYP ESLRSMFNSS QFVETLSYFQ QLLQEGIFDL SISGTDNEDY  360
ITLKRLVLQN FSRSTWVEHY KRLKDIKKKQ YVGGKEVVTD SSYHGHSNFT RLKRSMDAQN  420
LKFSEPDSAM RSPKRLASSV FDVEDFVDND GTCFSPRTIF ATPPERSSSL LCSLQFTDDN  480
SDHGLLLDVP SSSSFPEAEL LYYTSNPKRN NSSSESRIFG DGEESLSNLP VSSFNSQKPR  540
QR*

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G17570.3	2e-96	GATA family protein