PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

evm.model.AsparagusV1_Unassigned.582

Organism

Asparagus officinalis

Taxonomic ID

4686

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Asparagaceae; Asparagoideae; Asparagus

Family

C3H

Protein Properties

Length: 1475aa MW: 162205 Da PI: 6.4729

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
evm.model.AsparagusV1_Unassigned.582	genome	Phytozome	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	19.5	1.8e-06	1454	1473	5	25
--SGGGGTS--TTTTT-SS-S CS zf-CCCH 5 lCrffartGtCkyGdrCkFaH 25 +C+ f+++G+Ck G++C++ H evm.model.AsparagusV1_Unassigned.582 1454 ICK-FHESGYCKKGASCNYVH 1473 799.***************** PP

Sequence ? help Back to Top
Protein Sequence Length: 1475 aa Download sequence
GCPKVYHAAC INRDEAFFQT RGKWTCGWHI CSECNKAAQY MCYTCTYSLC KGCIKKKGFV 60 CVRGKKGFCE PCYDTVMSLE LKGPSNEGKV AMDVHEKSSF ECLLEYYWFD MKRRLSLTAE 120 ELQNARNSLK GSGSYARKDD SSSDELYNCN DEGEASSDSS SGRRRGGSSV RKKLRRRSRA 180 IIAEEDHPVQ QVGNIAASVS EDTEWASKEL LELVAHMKGG DRSVLSQFDV QALLLEYIKQ 240 NNLRDPRRKS QIICDTRLEN LFGKARVGHF EMLKLLESHF LIKDASQGVA DDNEEAAPDS 300 GQMDADVYGD GTTKGISDKR RRNRKKVEER EPQTNLDDYA AIDVHNISLI FLRRNLMEDL 360 LDDVDKFTEK VIGSFVRIRI SSAVQKQDMY RLVQVVGTSK AAEKYKTGRK NTDFILEILN 420 LNKKEVITID TVSNQDFTEE ECKRLRQSIK CGLINRLTVG DIQEKAMVLQ AVRVNDWLES 480 EKQRIGHLRD RASETGRRKE YPQSDSVVIL IELFVMLLVA IAIVTNICLS YTLSEKLQLL 540 NSTEERNRRL NEVPKIHSDP KMDPDHESAD EEESDDKKQD VFSRPRDSHF RKGKDLLSPG 600 RGGAASSNWN GGRKGSSVVW DSSRNERVEG AQDKTEAQEK VVLRASNWEA GTDANGLEAA 660 VWNNNQSEIG PGLSHGVTPE TTSEAPLSED TNETEKIWNY KDPAGKIQGP FSMVQLRKWN 720 TTGYFPVDMK IWRASENEED SVLLTDALSG RFDKDLPQWE PPQSNYCQPT TVVADQSSSG 780 RENSHLTSVG NSPNQSIWTN IVDKERLNVD GLASQSVIGL VHRIEAANPR EVSRMSLRGW 840 DSSMDPNALP GQSQVHNDLR PISPFYGTPH GPASYQGTGV QEIGNAGGWN PNNPVVTQPT 900 GHGYGQQHSN WGPSNRPSST NQWGNGSSTL PIPTQPNGGI WTPQGTINMA ASPTTPGVQM 960 IGTGWGLPPP SIPSVHPMGS GWGATTIPSA VTPFQPMSIG WGNTPPTGIN GGWHTHSTSM 1020 PNVENQMSGS NAAHIQRNSV DVPGGGWGSN SSLTLNVTNQ IIGFTAPHVQ RNQQSDASHV 1080 MQAPSAVFPV KGVISPSNPA VLGSSSSEQS RVVGKSQCFE SDCPSPTPSN ERQGLPVAQL 1140 DEVDNGKRWS EARALGMSDI SSGLQSDAMK SRPSSLIKEC DPLDNMSPIR ETESKPTGCV 1200 ENQDLDGEIH SPTPSRDGWE QSQALKPEPI MQKPEHVVTG DLEDDARRGS MWSLPSPTPA 1260 SQPNWGIAAQ DANFGIRSTA ENLKTGWGTL AQVAGNMNHE VLEDANANPN CGWGSWQETI 1320 MTANPDGENG QNSGWGTANQ GSGWGTEQDQ GKQWHRGGHG RESRYESRHG SYSRHGCDSR 1380 HDSRYGGDLR HGSRSGGESK YDLNYEGDSR YGSRYGGDSR HGGGRSHKGD RMHHERGGRS 1440 RTPPRGGEGQ GQGICKFHES GYCKKGASCN YVHT*

Sequence ? help Back to Top

Protein Sequence Length: 1475 aa Download sequence

GCPKVYHAAC INRDEAFFQT RGKWTCGWHI CSECNKAAQY MCYTCTYSLC KGCIKKKGFV  60
CVRGKKGFCE PCYDTVMSLE LKGPSNEGKV AMDVHEKSSF ECLLEYYWFD MKRRLSLTAE  120
ELQNARNSLK GSGSYARKDD SSSDELYNCN DEGEASSDSS SGRRRGGSSV RKKLRRRSRA  180
IIAEEDHPVQ QVGNIAASVS EDTEWASKEL LELVAHMKGG DRSVLSQFDV QALLLEYIKQ  240
NNLRDPRRKS QIICDTRLEN LFGKARVGHF EMLKLLESHF LIKDASQGVA DDNEEAAPDS  300
GQMDADVYGD GTTKGISDKR RRNRKKVEER EPQTNLDDYA AIDVHNISLI FLRRNLMEDL  360
LDDVDKFTEK VIGSFVRIRI SSAVQKQDMY RLVQVVGTSK AAEKYKTGRK NTDFILEILN  420
LNKKEVITID TVSNQDFTEE ECKRLRQSIK CGLINRLTVG DIQEKAMVLQ AVRVNDWLES  480
EKQRIGHLRD RASETGRRKE YPQSDSVVIL IELFVMLLVA IAIVTNICLS YTLSEKLQLL  540
NSTEERNRRL NEVPKIHSDP KMDPDHESAD EEESDDKKQD VFSRPRDSHF RKGKDLLSPG  600
RGGAASSNWN GGRKGSSVVW DSSRNERVEG AQDKTEAQEK VVLRASNWEA GTDANGLEAA  660
VWNNNQSEIG PGLSHGVTPE TTSEAPLSED TNETEKIWNY KDPAGKIQGP FSMVQLRKWN  720
TTGYFPVDMK IWRASENEED SVLLTDALSG RFDKDLPQWE PPQSNYCQPT TVVADQSSSG  780
RENSHLTSVG NSPNQSIWTN IVDKERLNVD GLASQSVIGL VHRIEAANPR EVSRMSLRGW  840
DSSMDPNALP GQSQVHNDLR PISPFYGTPH GPASYQGTGV QEIGNAGGWN PNNPVVTQPT  900
GHGYGQQHSN WGPSNRPSST NQWGNGSSTL PIPTQPNGGI WTPQGTINMA ASPTTPGVQM  960
IGTGWGLPPP SIPSVHPMGS GWGATTIPSA VTPFQPMSIG WGNTPPTGIN GGWHTHSTSM  1020
PNVENQMSGS NAAHIQRNSV DVPGGGWGSN SSLTLNVTNQ IIGFTAPHVQ RNQQSDASHV  1080
MQAPSAVFPV KGVISPSNPA VLGSSSSEQS RVVGKSQCFE SDCPSPTPSN ERQGLPVAQL  1140
DEVDNGKRWS EARALGMSDI SSGLQSDAMK SRPSSLIKEC DPLDNMSPIR ETESKPTGCV  1200
ENQDLDGEIH SPTPSRDGWE QSQALKPEPI MQKPEHVVTG DLEDDARRGS MWSLPSPTPA  1260
SQPNWGIAAQ DANFGIRSTA ENLKTGWGTL AQVAGNMNHE VLEDANANPN CGWGSWQETI  1320
MTANPDGENG QNSGWGTANQ GSGWGTEQDQ GKQWHRGGHG RESRYESRHG SYSRHGCDSR  1380
HDSRYGGDLR HGSRSGGESK YDLNYEGDSR YGSRYGGDSR HGGGRSHKGD RMHHERGGRS  1440
RTPPRGGEGQ GQGICKFHES GYCKKGASCN YVHT*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	171	177	RKKLRRR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G16485.1	0.0	C3H family protein