PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

evm.model.AsparagusV1_Unassigned.724

Organism

Asparagus officinalis

Taxonomic ID

4686

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Asparagaceae; Asparagoideae; Asparagus

Family

C3H

Protein Properties

Length: 565aa MW: 63053.1 Da PI: 6.0442

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
evm.model.AsparagusV1_Unassigned.724	genome	Phytozome	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	24.6	4.5e-08	15	36	3	25
S---SGGGGTS--TTTTT-SS-S CS zf-CCCH 3 telCrffartGtCkyGdrCkFaH 25 e+C ff++ G+C G+rC+F+H evm.model.AsparagusV1_Unassigned.724 15 SEPCIFFQK-GYCLKGERCPFSH 36 69*****.*********** PP

Sequence ? help Back to Top
Protein Sequence Length: 565 aa Download sequence
MAQTPAYNMN KQSRSEPCIF FQKGYCLKGE RCPFSHEVHA KGNVVPPQAA KASPLLPEQP 60 QAFKKEPWGI KQCANQQNVP KVSVELAPRA PVSSAKPSVG AEISSLNGLT HAKDLLPPSS 120 SYNLPRFQPV HPPVVNSNNA WTRSLNHQSD VEPGEIVGEH SSGFDVHVAK KYNMKGSAHF 180 RDGDDFGRKS AQGGRKVETL NDFKSANIYE RNQFSSSVDK FEQNGRAKDY YDIKQHRSSS 240 ERSFERSLLP ERRVLQRQKS PEEVDRADLR HRLKQRKLDD RYVEEKYRGH TIESSVSARL 300 RGRISLPGTS SGDSFRLQPE KDRDLSRNRG RLSPTRPPLG NQGRRYDRTR RSSEDPPTFA 360 GSRSLGSRLT KRVDADSVNF SGPKSLAELK GVKSTRGYQY SERSLSFEGP KPLSALLKRK 420 RGGDPVDGVN SSDGDENNQR NEVAGVSYSD PSSVAEQVQP SSVLDSNKED ERTITEFGPS 480 KAETVEEEEE DSTPSRDDDL TYDGAIDAME EDQGLQNLDQ RGDEYDYEAN ETGDLKTEYA 540 SQGEEEDELD DEEDFARKAG LLFS*

Sequence ? help Back to Top

Protein Sequence Length: 565 aa Download sequence

MAQTPAYNMN KQSRSEPCIF FQKGYCLKGE RCPFSHEVHA KGNVVPPQAA KASPLLPEQP  60
QAFKKEPWGI KQCANQQNVP KVSVELAPRA PVSSAKPSVG AEISSLNGLT HAKDLLPPSS  120
SYNLPRFQPV HPPVVNSNNA WTRSLNHQSD VEPGEIVGEH SSGFDVHVAK KYNMKGSAHF  180
RDGDDFGRKS AQGGRKVETL NDFKSANIYE RNQFSSSVDK FEQNGRAKDY YDIKQHRSSS  240
ERSFERSLLP ERRVLQRQKS PEEVDRADLR HRLKQRKLDD RYVEEKYRGH TIESSVSARL  300
RGRISLPGTS SGDSFRLQPE KDRDLSRNRG RLSPTRPPLG NQGRRYDRTR RSSEDPPTFA  360
GSRSLGSRLT KRVDADSVNF SGPKSLAELK GVKSTRGYQY SERSLSFEGP KPLSALLKRK  420
RGGDPVDGVN SSDGDENNQR NEVAGVSYSD PSSVAEQVQP SSVLDSNKED ERTITEFGPS  480
KAETVEEEEE DSTPSRDDDL TYDGAIDAME EDQGLQNLDQ RGDEYDYEAN ETGDLKTEYA  540
SQGEEEDELD DEEDFARKAG LLFS*