PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm.model.AsparagusV1_Unassigned.997
Organism
Asparagus officinalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Asparagaceae; Asparagoideae; Asparagus
Family M-type_MADS
Protein Properties Length: 197aa    MW: 21423.4 Da    PI: 10.4468
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm.model.AsparagusV1_Unassigned.997genomePhytozomeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF47.22.8e-151861245
                                          ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSE CS
                                SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgk 45
                                          ri ++  r+v fskRrng++ KA  LS+L +aevavi+ s+ g+
  evm.model.AsparagusV1_Unassigned.997 18 RIASEEARHVCFSKRRNGVFTKAADLSTLRGAEVAVIVNSPVGN 61
                                          89999***********************************9886 PP
Sequence ? help Back to Top
Protein Sequence    Length: 197 aa     Download sequence    
MARKKKASHG RKKIAIRRIA SEEARHVCFS KRRNGVFTKA ADLSTLRGAE VAVIVNSPVG  60
NPYSLGIPGV NQVIDRYSTR SPMPLEPNNP YRASRIGELN AQCMELSRRL DLANARKAEM  120
GARVREAAER NPYAKLVDDI DQGLGSRELK VAEEALRGVR AQGERRLGEL MRGGGACSDG  180
CESSEDDGRP VPVRVA*
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G24840.14e-23M-type_MADS family protein